PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G43250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 414aa    MW: 44173.2 Da    PI: 7.0947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G43250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.6e-18228274455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  OB03G43250.1 228 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 274
                   6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-18219278No hitNo description
SuperFamilySSF474592.09E-21222289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-15228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-22228283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDGNARSAAN QTKQIVTDNE LVELLWHNGG VVAQAQAHPR VVSSGRCRSV SGLTGEETAA  60
WFPDTMDDAL EKDLYTQLWH SVAASPDGDA FRGPGPAPPP GGAPRGGPPL RSGIGSSWPG  120
DICSTFCGSN NIPETPAGRR EAGAALPPER PRGASTHDGA GTSSSGGSGS NFAGSGLPSE  180
SASAHKRKAR GREDSDSRSE DAECEATEET KSSSRRYGSK RRTRAAEVHN LSERRRRDRI  240
NEKMRALQEL IPHCNKTDKA SILDEAIEYL KSLQMQVQIM WMTTGMAPMM FPGAHQFMAP  300
MAVGMNSACM PAAQGLSQMS RLPYMNHSLP NHIPLNSSPA MNPMNVANQM QNIQLREASN  360
PFLHPDGWQT APPQVSGPYP SGPQVAQQNQ IPKVPASTVL PNSGAEQPPT SDGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219236KRRTRAAEVHNLSERRRR
2232237ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056370.0AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633324.10.0PREDICTED: transcription factor PIF5 isoform X5
TrEMBLJ3LTE90.0J3LTE9_ORYBR; Uncharacterized protein
STRINGOB03G43250.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-33phytochrome interacting factor 3